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import os
import csv
from functions import *
import scipy.stats as st
import numpy as np
with open("results_sign_novelDTI_drugs_ndcg.csv", "w") as resFile:
top_k_size = 10
resFile.write("\n")
resFile.write("dataset;method;nDCG;t_nDCG;p_nDCG\n" )
dt = ["gpcr","ic", "nr", "e"]#
met = [ "blmnii", "wnngip", "netlaprls", "cmf","brdti"] #,"knn_bprcasq"
for dataset in dt:
resFile.write("\n")
max_ndcg = 0
v_max_ndcg = np.ones(50)
for cp in met: #get maximal values for each evaluation metric throughout the evaluated methods
with open(os.path.join('output','newDTI',cp+'_'+dataset+'_'+str(top_k_size)+'_drug_stats.csv'), 'rb') as csvfile:
reader = csv.reader(csvfile, delimiter=';', quotechar='"')
res = np.array(list(reader) )
v_ndcg = res[:,3]
v_ndcg = [s for s in v_ndcg if s != "nan" and s != "ndcg"]
v_ndcg = [float(d) for d in v_ndcg]
avg_ndcg = np.mean(v_ndcg)
if avg_ndcg > max_ndcg:
max_ndcg = avg_ndcg
v_max_ndcg = v_ndcg[:]
for cp in met: #calculate stat. sign. of other methods vs. the best one
with open(os.path.join('output','newDTI',cp+'_'+dataset+'_'+str(top_k_size)+'_drug_stats.csv'), 'rb') as csvfile:
reader = csv.reader(csvfile, delimiter=';', quotechar='"')
res = np.array(list(reader) )
cp_ndcg = res[:,3]
cp_ndcg = [s for s in cp_ndcg if s != "nan" and s != "ndcg"]
cp_ndcg = [float(d) for d in cp_ndcg]
x1, y1 = st.ttest_rel(v_max_ndcg, cp_ndcg)
resFile.write(dataset+";"+cp+";%.6f;%.9f;%.9f\n" % (np.mean(cp_ndcg), x1, y1/2.0) )
print dataset,cp, np.mean(cp_ndcg), x1, y1
print ""
with open("results_sign_novelDTI_drugs_recall.csv", "w") as resFile:
top_k_size = 10
resFile.write("\n")
resFile.write("dataset;method;recall;t_recall;p_recall\n" )
dt = ["gpcr","ic", "nr", "e"]#
met = [ "blmnii", "wnngip", "netlaprls", "cmf","knn_bprcasq"] #,"knn_bprcasq"
for dataset in dt:
resFile.write("\n")
max_ndcg = 0
v_max_ndcg = np.ones(50)
for cp in met: #get maximal values for each evaluation metric throughout the evaluated methods
with open(os.path.join('output','newDTI',cp+'_'+dataset+'_'+str(top_k_size)+'_drug_stats.csv'), 'rb') as csvfile:
reader = csv.reader(csvfile, delimiter=';', quotechar='"')
res = np.array(list(reader) )
v_ndcg = res[:,4]
v_ndcg = [s for s in v_ndcg if s != "nan" and s != "recall"]
v_ndcg = [float(d) for d in v_ndcg]
avg_ndcg = np.mean(v_ndcg)
if avg_ndcg > max_ndcg:
max_ndcg = avg_ndcg
v_max_ndcg = v_ndcg[:]
for cp in met: #calculate stat. sign. of other methods vs. the best one
with open(os.path.join('output','newDTI',cp+'_'+dataset+'_'+str(top_k_size)+'_drug_stats.csv'), 'rb') as csvfile:
reader = csv.reader(csvfile, delimiter=';', quotechar='"')
res = np.array(list(reader) )
cp_ndcg = res[:,4]
cp_ndcg = [s for s in cp_ndcg if s != "nan" and s != "recall"]
cp_ndcg = [float(d) for d in cp_ndcg]
x1, y1 = st.ttest_rel(v_max_ndcg, cp_ndcg)
resFile.write(dataset+";"+cp+";%.6f;%.9f;%.9f\n" % (np.mean(cp_ndcg), x1, y1/2.0) )
print dataset,cp, np.mean(cp_ndcg), x1, y1
print ""
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